Installation

You can install clustergram from conda-forge with conda or mamba or from PyPI with pip:

mamba install clustergram -c conda-forge

or

pip install clustergram

This will install only the required dependencies (pandas, matplotlib), but you still need to install your selected backend (scikit-learn and scipy or cuML).

mamba install scikit-learn scipy -c conda-forge

For installation of cuML, please refer to the RAPIDS.AI documentation.

If you want to use interactive plotting of clustergrams, you will also need Bokeh.

mamba install bokeh

From source

If you prefer to use development version, you can install it from GitHub with pip or clone and install a local copy.

pip install git+https://github.com/martinfleis/clustergram.git

Or clone and

cd clustergram
pip install .

Development environment

If you want to have all the tools (except RAPIDS), you can use environment-dev.yml.

conda env create -f environment-dev.yml